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  5. Cpa|evm.model.tig00021275.24

Cpa|evm.model.tig00021275.24 (tig00021275_g19884.t1)


Aliases : tig00021275_g19884.t1

Description : ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021275.24
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
OT_08G02770.1 No alias Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.06 OrthoFinder
OT_10G01100.1 No alias Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.05 OrthoFinder
OT_11G02060.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.05 OrthoFinder
XM_002503449.1 MICPUN_59866, 59866 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.1 OrthoFinder
XM_002503935.1 MICPUN_83563, 83563 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.04 OrthoFinder
XM_002508974.1 MICPUN_87320, 87320 Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.02 OrthoFinder
XM_003054912.1 MicpuC2_61359, 61359 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.05 OrthoFinder
lcl|BLLF01005719.1_cds_GFH31553.1_26030 HaLaN_30618, GFH31553 Membrane AAA-metalloprotease 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000642 Peptidase_M41 543 607
IPR041569 AAA_lid_3 441 481
IPR003959 ATPase_AAA_core 286 415
No external refs found!