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  5. EOD41448

EOD41448


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD41448
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.138 tig00000241_g21003.t1 No description available 0.01 OrthoFinder
Cre03.g199350 30787807 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder
Cz02g34030.t1 No alias HNH endonuclease; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Cz02g36150.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Dusal.0622s00009.1 33200105 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Sro59_g034290.1 Contig571.g7275 Annealing helicase and endonuclease ZRANB3 0.02 OrthoFinder
Transcript_contig_55026 55026 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0020s0120.1 32886803 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
XM_002505505.1 MICPUN_87840, 87840 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01001162.1_cds_GFH17529.1_12006 HaLaN_14187, GFH17529 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 56 285
IPR001650 Helicase_C 332 429
No external refs found!