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Description : Vacuolar protein sorting protein 46A [Ensembl].
Gene families : OG_01_0003320 (OrthoFinder) Phylogenetic Tree(s): OG0003320_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD40189 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020554.72 | tig00020554_g10852.t1 | Vesicle trafficking.endomembrane trafficking.ESCRT... | 0.01 | OrthoFinder | |
| Cre03.g188500 | 30787941, VPS46 | Vesicle trafficking.endomembrane trafficking.ESCRT... | 0.02 | OrthoFinder | |
| Transcript_contig_59252 | 59252 | Snf7 family [Interproscan]. | 0.01 | OrthoFinder | |
| lcl|VRMN01000008.1_cds_KAA8492750.1_2486 | KAA8492750 | Charged multivesicular body protein 1a | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0007034 | vacuolar transport | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0007021 | tubulin complex assembly | IEP | Enrichment |
| BP | GO:0007023 | post-chaperonin tubulin folding pathway | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| MF | GO:0015631 | tubulin binding | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| BP | GO:0022607 | cellular component assembly | IEP | Enrichment |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Enrichment |
| MF | GO:0048487 | beta-tubulin binding | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Enrichment |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Enrichment |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005024 | Snf7_fam | 16 | 177 |
| No external refs found! |