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Description : Smr domain [Interproscan].
Gene families : OG_01_0000989 (OrthoFinder) Phylogenetic Tree(s): OG0000989_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD38818 | |
| Cluster | HCCA: Cluster_190 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020629.149 | tig00020629_g12480.t1 | No description available | 0.03 | OrthoFinder | |
| Dusal.0066s00030.1 | 33195434 | DNA mismatch repair protein MutS, C-terminal [Interproscan]. | 0.01 | OrthoFinder | |
| PTI_14G02910.1 | No alias | DNA mismatch repair protein MutS, C-terminal; Smr domain... | 0.02 | OrthoFinder | |
| Sro54_g031760.1 | Contig2430.g19864 | Endonuclease MutS2 (Fragment) | 0.01 | OrthoFinder | |
| lcl|BLLF01004501.1_cds_GFH29739.1_24216 | HaLaN_28453, GFH29739 | DNA_MISMATCH_REPAIR_2 domain-containing protein | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003684 | damaged DNA binding | IEP | Enrichment |
| MF | GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | IEP | Enrichment |
| MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006281 | DNA repair | IEP | Enrichment |
| BP | GO:0006284 | base-excision repair | IEP | Enrichment |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Enrichment |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
| MF | GO:0008270 | zinc ion binding | IEP | Enrichment |
| MF | GO:0008716 | D-alanine-D-alanine ligase activity | IEP | Enrichment |
| BP | GO:0016042 | lipid catabolic process | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Enrichment |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Enrichment |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Enrichment |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Enrichment |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Enrichment |
| BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002625 | Smr_dom | 824 | 897 |
| No external refs found! |