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  5. EOD38177

EOD38177


Description : Ribosomal protein L6, alpha-beta domain [Interproscan].


Gene families : OG_01_0003467 (OrthoFinder) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD38177
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001532.12 tig00001532_g9278.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 OrthoFinder
Cre12.g494050 30792426, RPL9 Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder
Cz02g22040.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
Dusal.0391s00002.1 33187356 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.18 OrthoFinder
OT_04G01760.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.19 OrthoFinder
PTI_04G03310.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.23 OrthoFinder
Sro227_g092220.1 Contig327.g4334 60S ribosomal protein L9 0.31 OrthoFinder
SymbC1.scaffold52.16 52.16 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold8093.1 8093.1 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
TP02G08750.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.18 OrthoFinder
Vocar.0031s0019.1 32890092 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
XM_002501436.1 MICPUN_106868, 106868 Ribosomal l9-like protein 0.26 OrthoFinder
XM_003057971.1 MicpuC2_32821, 32821 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.18 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58897.1_6880 PRW58897 60S ribosomal L9 0.13 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492880.1_2616 KAA8492880 60S ribosomal protein L9-2 0.17 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490502.1_4652 KAA8490502 60S ribosomal protein L9-2 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006839 mitochondrial transport IEP Enrichment
BP GO:0006848 pyruvate transport IEP Enrichment
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030150 protein import into mitochondrial matrix IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0065002 intracellular protein transmembrane transport IEP Enrichment
BP GO:0070585 protein localization to mitochondrion IEP Enrichment
BP GO:0071806 protein transmembrane transport IEP Enrichment
BP GO:0072655 establishment of protein localization to mitochondrion IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:0098656 anion transmembrane transport IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
BP GO:1901475 pyruvate transmembrane transport IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
BP GO:1990542 mitochondrial transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 100 179
IPR020040 Ribosomal_L6_a/b-dom 15 88
No external refs found!