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  5. Cpa|evm.model.tig00000157.59

Cpa|evm.model.tig00000157.59 (tig00000157_g9646.t1)


Aliases : tig00000157_g9646.t1

Description : Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana


Gene families : OG_01_0001270 (OrthoFinder) Phylogenetic Tree(s): OG0001270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000157.59
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
Cre03.g152950 30787527 RNA processing.RNA... 0.02 OrthoFinder
Cre16.g691900 30776864 RNA processing.RNA... 0.01 OrthoFinder
PTI_11G00610.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_57035 57035 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.01 OrthoFinder
Vocar.0019s0103.1 32892839 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01005011.1_cds_GFH30598.1_25075 HaLaN_29481, GFH30598 Protein kinase domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495254.1_1252 KAA8495254 TRNA pseudouridine synthase A, mitochondrial 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 298 383
No external refs found!