Cpa|evm.model.tig00021127.70 (tig00021127_g18747.t1)

Aliases : tig00021127_g18747.t1

Description : ABC transporter B family member 25 OS=Oryza sativa subsp. japonica

Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021127.70
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
Cz07g17170.t1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
Dusal.0274s00010.1	33185624	ABC transporter type 1, transmembrane domain [Interproscan].	0.01	OrthoFinder
Sro1234_g254930.1	Contig2459.g20128	Probable microcin-H47 secretion/processing ATP-binding...	0.01	OrthoFinder
Sro157_g071300.1	Contig2362.g19420	Lactococcin transport/processing ATP-binding protein LcnC-like	0.02	OrthoFinder
Sro1631_g287230.1	Contig2461.g20146	Leptomycin B resistance protein pmd1	0.01	OrthoFinder
TP12G00540.1	No alias	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
XM_002502028.1	MICPUN_58471, 58471	ATP-binding cassette superfamily	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	Enrichment
MF	GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006664	glycolipid metabolic process	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Enrichment
MF	GO:0008171	O-methyltransferase activity	IEP	Enrichment
BP	GO:0009247	glycolipid biosynthetic process	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Enrichment
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
MF	GO:0070008	serine-type exopeptidase activity	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
BP	GO:1903509	liposaccharide metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	565	652
IPR011527	ABC1_TM_dom	165	437

External Links

No external refs found!