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  5. EOD31963

EOD31963


Description : Putative ABC transporter [Ensembl].


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD31963
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020952.7 tig00020952_g16473.t1 ABC transporter B family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g725200 30782751 ABC transporter B family member 12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz02g34060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Dusal.0274s00010.1 33185624 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
EOD14122 No alias Putative ABC transporter [Ensembl]. 0.06 OrthoFinder
EOD33358 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
PTI_03G01030.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
PTI_07G02520.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.04 OrthoFinder
PTI_13G02060.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
SymbC1.scaffold3653.4 3653.4 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
TP12G00540.1 No alias ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Transcript_contig_54411 54411 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494946.1_3476 KAA8494946 Multidrug resistance protein 1B 0.01 OrthoFinder
lcl|VRMN01000027.1_cds_KAA8490454.1_2885 KAA8490454 ATP-binding cassette sub-family B member 10, mitochondrial 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006835 dicarboxylic acid transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015740 C4-dicarboxylate transport IEP Enrichment
BP GO:0015743 malate transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1033 1156
IPR011527 ABC1_TM_dom 673 936
IPR011527 ABC1_TM_dom 45 295
IPR003439 ABC_transporter-like_ATP-bd 360 506
No external refs found!