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  5. EOD31071

EOD31071


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD31071
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.188 tig00000144_g9184.t1 ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cpa|evm.model.tig00000691.35 tig00000691_g3188.t1 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021275.25 tig00021275_g19885.t1 Probable chromatin-remodeling complex ATPase chain... 0.01 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.08 OrthoFinder
Cre09.g390000 30781417 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cz04g03240.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Cz04g34020.t1 No alias Helicase, C-terminal; Chromo domain; SNF2-related,... 0.06 OrthoFinder
Cz16g07230.t1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.09 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.07 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.04 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.08 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.01 OrthoFinder
Sro264_g102660.1 Contig921.g9692 Probable chromatin-remodeling complex ATPase chain 0.05 OrthoFinder
Sro29_g019150.1 Contig1384.g12758 CHD3-type chromatin-remodeling factor CHR7 0.03 OrthoFinder
Sro463_g148220.1 Contig3968.g30431 Probable chromatin-remodeling complex ATPase chain 0.03 OrthoFinder
Transcript_contig_53936 53936 Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Transcript_contig_55210 55210 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0004s0442.1 32889776 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0019s0100.1 32892722 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.03 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.02 OrthoFinder
XM_002507782.1 MICPUN_60518, 60518 SNF2 super family 0.05 OrthoFinder
XM_003062178.1 MicpuC2_21039, 21039 SNF2 super family 0.03 OrthoFinder
XM_003062821.1 MicpuC2_52710, 52710 FY-rich, N-terminal; Helicase, C-terminal; FY-rich,... 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60864.1_4118 PRW60864 SNF2 super family 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56740.1_9705 PRW56740 Chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20842.1_5116 PRW20842 ATP-dependent DNA helicase DDM1 isoform X1 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499078.1_8031 KAA8499078 SWI/SNF chromatin-remodeling complex subunit snf22 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496039.1_2037 KAA8496039 ATP-dependent DNA helicase DDM1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 30 210
IPR001650 Helicase_C 235 349
No external refs found!