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  5. EOD30893

EOD30893


Description : Brix domain [Interproscan].


Gene families : OG_01_0002998 (OrthoFinder) Phylogenetic Tree(s): OG0002998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD30893
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.36 tig00001003_g6291.t1 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g197000 30787867 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz01g37260.t1 No alias Brix domain [Interproscan]. 0.07 OrthoFinder
Dusal.0095s00009.1 33190289 Brix domain [Interproscan]. 0.05 OrthoFinder
OT_17G01690.1 No alias Brix domain [Interproscan]. 0.06 OrthoFinder
PTI_06G01690.1 No alias Brix domain [Interproscan]. 0.09 OrthoFinder
Sro545_g163870.1 Contig1180.g11230 Production factor 2 homolog 0.1 OrthoFinder
TP03G03260.1 No alias Brix domain [Interproscan]. 0.1 OrthoFinder
Transcript_contig_82014 82014 Brix domain [Interproscan]. 0.07 OrthoFinder
Vocar.0011s0309.1 32895454 Brix domain [Interproscan]. 0.03 OrthoFinder
XM_002506064.1 MICPUN_70830, 70830 Brix domain [Interproscan]. 0.07 OrthoFinder
XM_003056730.1 MicpuC2_5469, 5469 Brix domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001273.1_cds_GFH18265.1_12742 HaLaN_15038, GFH18265 Brix domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60459.1_4392 PRW60459 Ribosome production factor 2-like protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497175.1_904 KAA8497175 Ribosome production factor 2-like 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007109 Brix 36 243
No external refs found!