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  5. Cpa|evm.model.tig00021108.38

Cpa|evm.model.tig00021108.38 (tig00000663_g2933.t1)


Aliases : tig00000663_g2933.t1

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021108.38
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01001288.1_cds_GFH18346.1_12823 HaLaN_15138, GFH18346 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44975.1_1767 PRW44975 Transcription factor MYB44-like 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492832.1_2568 KAA8492832 Transcriptional activator Myb 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009581 detection of external stimulus IEP Enrichment
BP GO:0009582 detection of abiotic stimulus IEP Enrichment
BP GO:0009583 detection of light stimulus IEP Enrichment
BP GO:0009584 detection of visible light IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 5 57
IPR001005 SANT/Myb 63 106
No external refs found!