1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021108.27

Cpa|evm.model.tig00021108.27 (tig00021108_g18317.t1)


Aliases : tig00021108_g18317.t1

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021108.27
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Cz05g04180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz07g08180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz08g27130.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Cz18g11100.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0002s00036.1 33187941 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.01 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.01 OrthoFinder
EOD31616 No alias Putative histone H2A [Ensembl]. 0.01 OrthoFinder
OT_02G00110.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.07 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.01 OrthoFinder
PTI_09G00030.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.04 OrthoFinder
PTI_12G01390.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.03 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.06 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.02 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.01 OrthoFinder
Vocar.0001s0880.1 32885856 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0001s1633.1 32885235 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0016s0271.1 32898098 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0027s0138.1 32887219 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60758.1_4580 PRW60758 Putative histone H2A variant 3 0.07 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57339.1_9052 PRW57339 Histone H2A 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32953.1_3761 PRW32953 Histone H2A 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 94 123
IPR007125 Histone_H2A/H2B/H3 6 93
No external refs found!