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  5. EOD29710

EOD29710


Description : Putative endopeptidase Clp [Ensembl].


Gene families : OG_01_0000040 (OrthoFinder) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD29710
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.6 tig00000842_g4825.t1 ATP-dependent Clp protease proteolytic subunit... 0.01 OrthoFinder
Cpa|evm.model.tig00020553.201 tig00020553_g10691.t1 ATP-dependent Clp protease proteolytic subunit 4,... 0.01 OrthoFinder
Cpa|evm.model.tig00020563.155 tig00020563_g11357.t1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre12.g500950 30792003, CLPP4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre16.g682900 30778138, CLPR2 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cz02g22090.t1 No alias Clp protease proteolytic subunit... 0.01 OrthoFinder
Dusal.0235s00001.1 33189619 Clp protease proteolytic subunit... 0.02 OrthoFinder
OT_02G01220.1 No alias Clp protease proteolytic subunit... 0.03 OrthoFinder
OT_02G02070.1 No alias Clp protease proteolytic subunit... 0.03 OrthoFinder
Transcript_contig_53937 53937 Clp protease proteolytic subunit... 0.01 OrthoFinder
Transcript_contig_56182 56182 Clp protease proteolytic subunit... 0.01 OrthoFinder
Vocar.0011s0141.1 32895480 Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_002507517.1 MICPUN_112702, 112702 Endopeptidase clp chloroplast precursor (CLP1) 0.01 OrthoFinder
XM_003054761.1 MicpuC2_12936, 12936 Clp protease proteolytic subunit... 0.01 OrthoFinder
lcl|BLLF01000770.1_cds_GFH14819.1_9296 HaLaN_10940, GFH14819 ATP-dependent Clp protease proteolytic subunit 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44960.1_1979 PRW44960 Protease complex subunit 3 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 46 232
No external refs found!