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  5. EOD29254

EOD29254


Description : Small-subunit processome, Utp13; WD40 repeat [Interproscan].


Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD29254
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.61 tig00000704_g3346.t2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cpa|evm.model.tig00000704.62 tig00000704_g3346.t2 No description available 0.02 OrthoFinder
Cre07.g344050 30774587 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz04g09230.t1 No alias WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.08 OrthoFinder
Dusal.0002s00015.1 33187975 WD40 repeat [Interproscan]. 0.03 OrthoFinder
EOD09005 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
OT_08G01420.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.06 OrthoFinder
OT_14G00400.1 No alias Thioredoxin domain; Phosphoadenosine phosphosulphate... 0.02 OrthoFinder
PTI_06G04180.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.09 OrthoFinder
Sro1027_g232980.1 Contig109.g1249 Transducin beta-like protein 3 0.06 OrthoFinder
Sro2695_g334900.1 Contig897.g9510 Transducin beta-like 3 0.01 OrthoFinder
TP04G06150.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_57084 57084 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Vocar.0011s0002.1 32895390 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.05 OrthoFinder
XM_002503015.1 MICPUN_83206, 83206 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.11 OrthoFinder
XM_003058642.1 MicpuC2_518, 518 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000847.1_cds_GFH15415.1_9892 HaLaN_11639, GFH15415 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|BLLF01003674.1_cds_GFH27926.1_22403 HaLaN_26320, GFH27926 Thioredoxin domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493381.1_9682 KAA8493381 Transducin beta-like protein 3 0.02 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490480.1_2842 KAA8490480 5'-adenylylsulfate reductase 2, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 136 172
IPR001680 WD40_repeat 293 325
IPR001680 WD40_repeat 177 214
IPR001680 WD40_repeat 504 540
IPR001680 WD40_repeat 93 129
IPR013934 SSU_processome_Utp13 628 761
No external refs found!