EOD28352

Description : Arginine-tRNA ligase [Ensembl].

Gene families : OG_01_0000600 (OrthoFinder) Phylogenetic Tree(s): OG0000600_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD28352
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000711.7	tig00000711_g3368.t1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder
Cre03.g143887	30787653	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder
Cz04g31060.t1	No alias	Arginyl tRNA synthetase N-terminal domain; Arginyl-tRNA...	0.03	OrthoFinder
Dusal.0277s00002.1	33188112	Squalene epoxidase [Interproscan].	0.01	OrthoFinder
EOD23606	No alias	Arginyl-tRNA synthetase, catalytic core domain; Arginyl...	0.01	OrthoFinder
OT_02G01090.1	No alias	Arginyl-tRNA synthetase, catalytic core domain; DALR...	0.01	OrthoFinder
PTI_00G03620.1	No alias	Arginyl-tRNA synthetase, catalytic core domain; Arginyl...	0.01	OrthoFinder
Sro44_g026590.1	Contig358.g4828	Arginine--tRNA ligase	0.01	OrthoFinder
Sro589_g171830.1	Contig2898.g23120	Arginine--tRNA ligase	0.04	OrthoFinder
TP03G07150.1	No alias	Arginyl-tRNA synthetase, catalytic core domain; DALR...	0.03	OrthoFinder
TP13G01500.1	No alias	DALR anticodon binding; Arginyl-tRNA synthetase,...	0.02	OrthoFinder
Transcript_contig_53953	53953	Arginyl-tRNA synthetase, catalytic core domain; DALR...	0.01	OrthoFinder
Vocar.0012s0134.1	32894825	Squalene epoxidase; NAD(P)-binding Rossmann-like domain...	0.01	OrthoFinder
Vocar.0014s0010.1	32888656	DALR anticodon binding; Arginyl tRNA synthetase...	0.02	OrthoFinder
XM_003058564.1	MicpuC2_49604, 49604	NAD(P)-binding Rossmann-like domain; Squalene epoxidase...	0.02	OrthoFinder
lcl\|BLLF01000592.1_cds_GFH13267.1_7744	HaLaN_09114, GFH13267	Putative arginine--tRNA ligase, cytoplasmic	0.01	OrthoFinder
lcl\|LHPG02000011.1_cds_PRW45481.1_1608	PRW45481	Arginine-tRNA chloroplastic mitochondrial-like isoform...	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496017.1_2015	KAA8496017	Squalene monooxygenase	0.01	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494154.1_4018	KAA8494154	Arginine--tRNA ligase	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004814	arginine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006420	arginyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Enrichment
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Enrichment
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Enrichment
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Enrichment
MF	GO:0004181	metallocarboxypeptidase activity	IEP	Enrichment
MF	GO:0004834	tryptophan synthase activity	IEP	Enrichment
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0005543	phospholipid binding	IEP	Enrichment
CC	GO:0005680	anaphase-promoting complex	IEP	Enrichment
BP	GO:0005984	disaccharide metabolic process	IEP	Enrichment
BP	GO:0005991	trehalose metabolic process	IEP	Enrichment
BP	GO:0005992	trehalose biosynthetic process	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006568	tryptophan metabolic process	IEP	Enrichment
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Enrichment
BP	GO:0006586	indolalkylamine metabolic process	IEP	Enrichment
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Enrichment
MF	GO:0008171	O-methyltransferase activity	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008235	metalloexopeptidase activity	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
MF	GO:0008238	exopeptidase activity	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
MF	GO:0008488	gamma-glutamyl carboxylase activity	IEP	Enrichment
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0008521	acetyl-CoA transmembrane transporter activity	IEP	Enrichment
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Enrichment
BP	GO:0009308	amine metabolic process	IEP	Enrichment
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Enrichment
CC	GO:0009507	chloroplast	IEP	Enrichment
CC	GO:0009536	plastid	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010564	regulation of cell cycle process	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	Enrichment
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Enrichment
MF	GO:0016597	amino acid binding	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0016829	lyase activity	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
BP	GO:0017187	peptidyl-glutamic acid carboxylation	IEP	Enrichment
BP	GO:0018200	peptidyl-glutamic acid modification	IEP	Enrichment
BP	GO:0018214	protein carboxylation	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
CC	GO:0030014	CCR4-NOT complex	IEP	Enrichment
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	Enrichment
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Enrichment
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Enrichment
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Enrichment
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Enrichment
MF	GO:0035091	phosphatidylinositol binding	IEP	Enrichment
BP	GO:0042430	indole-containing compound metabolic process	IEP	Enrichment
MF	GO:0042887	amide transmembrane transporter activity	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0044106	cellular amine metabolic process	IEP	Enrichment
BP	GO:0046351	disaccharide biosynthetic process	IEP	Enrichment
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
BP	GO:0051983	regulation of chromosome segregation	IEP	Enrichment
MF	GO:0071077	adenosine 3',5'-bisphosphate transmembrane transporter activity	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Enrichment
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Enrichment
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment
BP	GO:1905818	regulation of chromosome separation	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR008909	DALR_anticod-bd	466	596
IPR005148	Arg-tRNA-synth_N	3	86
IPR035684	ArgRS_core	110	452

External Links

No external refs found!

EOD28352

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation