EOD28352


Description : Arginine-tRNA ligase [Ensembl].


Gene families : OG_01_0000600 (OrthoFinder) Phylogenetic Tree(s): OG0000600_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD28352
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.7 tig00000711_g3368.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder
Cre03.g143887 30787653 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cz04g31060.t1 No alias Arginyl tRNA synthetase N-terminal domain; Arginyl-tRNA... 0.03 OrthoFinder
Dusal.0277s00002.1 33188112 Squalene epoxidase [Interproscan]. 0.01 OrthoFinder
EOD23606 No alias Arginyl-tRNA synthetase, catalytic core domain; Arginyl... 0.01 OrthoFinder
OT_02G01090.1 No alias Arginyl-tRNA synthetase, catalytic core domain; DALR... 0.01 OrthoFinder
PTI_00G03620.1 No alias Arginyl-tRNA synthetase, catalytic core domain; Arginyl... 0.01 OrthoFinder
Sro44_g026590.1 Contig358.g4828 Arginine--tRNA ligase 0.01 OrthoFinder
Sro589_g171830.1 Contig2898.g23120 Arginine--tRNA ligase 0.04 OrthoFinder
TP03G07150.1 No alias Arginyl-tRNA synthetase, catalytic core domain; DALR... 0.03 OrthoFinder
TP13G01500.1 No alias DALR anticodon binding; Arginyl-tRNA synthetase,... 0.02 OrthoFinder
Transcript_contig_53953 53953 Arginyl-tRNA synthetase, catalytic core domain; DALR... 0.01 OrthoFinder
Vocar.0012s0134.1 32894825 Squalene epoxidase; NAD(P)-binding Rossmann-like domain... 0.01 OrthoFinder
Vocar.0014s0010.1 32888656 DALR anticodon binding; Arginyl tRNA synthetase... 0.02 OrthoFinder
XM_003058564.1 MicpuC2_49604, 49604 NAD(P)-binding Rossmann-like domain; Squalene epoxidase... 0.02 OrthoFinder
lcl|BLLF01000592.1_cds_GFH13267.1_7744 HaLaN_09114, GFH13267 Putative arginine--tRNA ligase, cytoplasmic 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45481.1_1608 PRW45481 Arginine-tRNA chloroplastic mitochondrial-like isoform... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496017.1_2015 KAA8496017 Squalene monooxygenase 0.01 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494154.1_4018 KAA8494154 Arginine--tRNA ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004814 arginine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006420 arginyl-tRNA aminoacylation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030014 CCR4-NOT complex IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
InterPro domains Description Start Stop
IPR008909 DALR_anticod-bd 466 596
IPR005148 Arg-tRNA-synth_N 3 86
IPR035684 ArgRS_core 110 452
No external refs found!