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  5. EOD27141

EOD27141


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0000209 (OrthoFinder) Phylogenetic Tree(s): OG0000209_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD27141
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001214.14 tig00001214_g7556.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00021525.19 tig00021525_g22135.t1 No description available 0.02 OrthoFinder
Cre12.g530450 30792876 No description available 0.02 OrthoFinder
Vocar.0008s0435.1 32897396 Zinc finger, C3HC4 RING-type [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495326.1_1324 KAA8495326 RING finger protein nhl-1 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493495.1_4257 KAA8493495 DNA excision repair protein ERCC-8 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 194 224
IPR001680 WD40_repeat 276 308
IPR001680 WD40_repeat 108 140
No external refs found!