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  5. EOD26743

EOD26743


Description : Protein of unknown function (DUF3223); La-type HTH domain [Interproscan].


Gene families : OG_01_0000377 (OrthoFinder) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD26743
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000498.93 tig00000498_g1673.t1 No description available 0.05 OrthoFinder
Cpa|evm.model.tig00021589.16 tig00021589_g22722.t1 Serine/threonine-protein kinase Nek2 OS=Oryza sativa... 0.02 OrthoFinder
Cre10.g441200 30790096 RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder
Cre17.g724200 30781820, LAL1 La protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz06g07100.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz06g07110.t1 No alias La-type HTH domain [Interproscan]. 0.04 OrthoFinder
Cz13g03150.t1 No alias La protein, RNA-binding domain; RNA recognition motif... 0.07 OrthoFinder
OT_01G04880.1 No alias RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4617.10 4617.10 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_8474 8474 RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1267.1 32884310 La-type HTH domain [Interproscan]. 0.02 OrthoFinder
XM_002501650.1 MICPUN_99967, 99967 La-type HTH domain [Interproscan]. 0.03 OrthoFinder
XM_003064256.1 MicpuC2_7758, 7758 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01000100.1_cds_GFH07526.1_2003 HaLaN_02341, GFH07526 HTH La-type RNA-binding domain-containing protein 0.04 OrthoFinder
lcl|BLLF01003364.1_cds_GFH27142.1_21619 HaLaN_25415, GFH27142 RNA binding protein 0.04 OrthoFinder
lcl|BLLF01003838.1_cds_GFH28342.1_22819 HaLaN_26819, GFH28342 HTH La-type RNA-binding domain-containing protein 0.04 OrthoFinder
lcl|BLLF01003838.1_cds_GFH28343.1_22820 HaLaN_26820, GFH28343 HTH La-type RNA-binding domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56866.1_9788 PRW56866 La-related 1A isoform X1 0.1 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45723.1_1269 PRW45723 La 1 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499276.1_8229 KAA8499276 RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494867.1_3397 KAA8494867 Lupus La protein 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493506.1_4268 KAA8493506 La-related protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006630 La_HTH 51 98
No external refs found!