Description : SNF2-related, N-terminal domain; ISWI, HAND domain; Helicase, C-terminal; DBINO domain; SLIDE domain [Interproscan].
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: EOD26260 | |
Cluster | HCCA: Cluster_17 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020960.24 | tig00020960_g16545.t1 | Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cre07.g325700 | 30774388 | ATP-dependent helicase BRM OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cre12.g508150 | 30793288 | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder | |
Cre16.g647602 | 30777036 | ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cz02g31160.t1 | No alias | Helicase, C-terminal; SLIDE domain; SNF2-related,... | 0.02 | OrthoFinder | |
Cz07g13180.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
Cz16g07210.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
Cz16g07220.t1 | No alias | Helicase, C-terminal [Interproscan]. | 0.02 | OrthoFinder | |
Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
Dusal.0752s00002.1 | 33199466 | Domain of unknown function DUF3535; SNF2-related,... | 0.02 | OrthoFinder | |
Dusal.0752s00003.1 | 33199467 | HEAT-like repeat [Interproscan]. | 0.03 | OrthoFinder | |
EOD05386 | No alias | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.03 | OrthoFinder | |
EOD18155 | No alias | High mobility group box domain; ISWI, HAND domain;... | 0.03 | OrthoFinder | |
EOD23118 | No alias | SNF2-related, N-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
OT_07G04400.1 | No alias | Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... | 0.03 | OrthoFinder | |
Sro847_g210300.1 | Contig4605.g34375 | CHD3-type chromatin-remodeling factor | 0.01 | OrthoFinder | |
Sro860_g212120.1 | Contig2239.g18594 | ISWI chromatin-remodeling complex ATPase ISW2 | 0.02 | OrthoFinder | |
TP11G02170.1 | No alias | SNF2-related, N-terminal domain; Chromo domain;... | 0.02 | OrthoFinder | |
Transcript_contig_67500 | 67500 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
XM_002503134.1 | MICPUN_59225, 59225 | SNF2 super family | 0.02 | OrthoFinder | |
XM_003058971.1 | MicpuC2_58412, 58412 | SNF2 super family | 0.02 | OrthoFinder | |
lcl|BLLF01001410.1_cds_GFH19126.1_13603 | HaLaN_16027, GFH19126 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.04 | OrthoFinder | |
lcl|BLLF01003574.1_cds_GFH27683.1_22160 | HaLaN_26047, GFH27683 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|LHPG02000008.1_cds_PRW56740.1_9705 | PRW56740 | Chromatin-remodeling complex ATPase chain | 0.04 | OrthoFinder | |
lcl|LHPG02000017.1_cds_PRW33099.1_3518 | PRW33099 | SNF2 family DNA-dependent ATPase | 0.02 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 | KAA8498955 | SWI/SNF chromatin-remodeling complex subunit snf22 | 0.02 | OrthoFinder | |
lcl|VRMN01000007.1_cds_KAA8493126.1_9427 | KAA8493126 | Chromatin structure-remodeling complex subunit snf21 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
CC | GO:0005634 | nucleus | IEA | Interproscan |
BP | GO:0006338 | chromatin remodeling | IEA | Interproscan |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEA | Interproscan |
MF | GO:0031491 | nucleosome binding | IEA | Interproscan |
BP | GO:0043044 | ATP-dependent chromatin remodeling | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003684 | damaged DNA binding | IEP | Enrichment |
MF | GO:0003774 | motor activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004672 | protein kinase activity | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
BP | GO:0006281 | DNA repair | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
BP | GO:0006468 | protein phosphorylation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0006950 | response to stress | IEP | Enrichment |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016301 | kinase activity | IEP | Enrichment |
BP | GO:0016310 | phosphorylation | IEP | Enrichment |
CC | GO:0016459 | myosin complex | IEP | Enrichment |
MF | GO:0016462 | pyrophosphatase activity | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016758 | hexosyltransferase activity | IEP | Enrichment |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
BP | GO:0030258 | lipid modification | IEP | Enrichment |
BP | GO:0030259 | lipid glycosylation | IEP | Enrichment |
CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
BP | GO:0036211 | protein modification process | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0050896 | response to stimulus | IEP | Enrichment |
BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
No external refs found! |