EOD24426

Description : TOPRIM domain; DNA topoisomerase, type IA, central [Interproscan].

Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD24426
Cluster	HCCA: Cluster_226

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000383.96	tig00000383_g24706.t1	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder
Dusal.0225s00019.1	33185203	DNA topoisomerase, type IA, central; TOPRIM domain...	0.01	OrthoFinder
OT_03G04080.1	No alias	Zinc finger, CCHC-type; DNA topoisomerase, type IA,...	0.02	OrthoFinder
PTI_01G08220.1	No alias	TOPRIM domain; DNA topoisomerase, type IA, central...	0.03	OrthoFinder
TP23G01460.1	No alias	DNA topoisomerase, type IA, central; TOPRIM domain...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004000	adenosine deaminase activity	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006473	protein acetylation	IEP	Enrichment
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Enrichment
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Enrichment
MF	GO:0016972	thiol oxidase activity	IEP	Enrichment
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	Enrichment
BP	GO:0018206	peptidyl-methionine modification	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
BP	GO:0030832	regulation of actin filament length	IEP	Enrichment
BP	GO:0030833	regulation of actin filament polymerization	IEP	Enrichment
CC	GO:0031248	protein acetyltransferase complex	IEP	Enrichment
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Enrichment
CC	GO:0031414	N-terminal protein acetyltransferase complex	IEP	Enrichment
CC	GO:0031417	NatC complex	IEP	Enrichment
BP	GO:0032271	regulation of protein polymerization	IEP	Enrichment
BP	GO:0032535	regulation of cellular component size	IEP	Enrichment
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Enrichment
BP	GO:0032970	regulation of actin filament-based process	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
MF	GO:0043015	gamma-tubulin binding	IEP	Enrichment
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Enrichment
BP	GO:0043543	protein acylation	IEP	Enrichment
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Enrichment
BP	GO:0090066	regulation of anatomical structure size	IEP	Enrichment
BP	GO:0110053	regulation of actin filament organization	IEP	Enrichment
CC	GO:1902493	acetyltransferase complex	IEP	Enrichment
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	16	161
IPR013497	Topo_IA_cen	178	607

External Links

No external refs found!

EOD24426

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation