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Description : Putative subunit of cohesin complex [Ensembl].
Gene families : OG_01_0001808 (OrthoFinder) Phylogenetic Tree(s): OG0001808_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD23679 | |
| Cluster | HCCA: Cluster_290 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre10.g445650 | 30790176, SMC3 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder | |
| OT_09G02100.1 | No alias | RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. | 0.03 | OrthoFinder | |
| Transcript_contig_54820 | 54820 | RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002508766.1 | MICPUN_85842, 85842 | Condensin complex component | 0.02 | OrthoFinder | |
| lcl|BLLF01000127.1_cds_GFH07947.1_2424 | HaLaN_02832, GFH07947 | SMC hinge domain-containing protein | 0.02 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495602.1_1600 | KAA8495602 | Chromosome segregation protein sudA | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000776 | kinetochore | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006270 | DNA replication initiation | IEP | Enrichment |
| BP | GO:0006275 | regulation of DNA replication | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Enrichment |
| CC | GO:0018995 | host cellular component | IEP | Enrichment |
| CC | GO:0030915 | Smc5-Smc6 complex | IEP | Enrichment |
| CC | GO:0031262 | Ndc80 complex | IEP | Enrichment |
| CC | GO:0033643 | host cell part | IEP | Enrichment |
| CC | GO:0033646 | host intracellular part | IEP | Enrichment |
| CC | GO:0033647 | host intracellular organelle | IEP | Enrichment |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0042025 | host cell nucleus | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| CC | GO:0099080 | supramolecular complex | IEP | Enrichment |
| CC | GO:0106068 | SUMO ligase complex | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| CC | GO:1990234 | transferase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003395 | RecF/RecN/SMC_N | 103 | 229 |
| No external refs found! |