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  5. EOD21949

EOD21949


Description : DNA mismatch repair protein muts [Ensembl].


Gene families : OG_01_0000718 (OrthoFinder) Phylogenetic Tree(s): OG0000718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD21949
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001224.8 tig00001224_g7630.t1 DNA damage response.DNA repair mechanisms.mismatch... 0.09 OrthoFinder
Cre01.g003463 30789210 DNA mismatch repair protein MSH2 OS=Zea mays 0.11 OrthoFinder
Cz05g29090.t1 No alias DNA mismatch repair protein MutS, C-terminal; DNA... 0.09 OrthoFinder
Dusal.0326s00004.1 33186765 DNA mismatch repair protein MutS, core; DNA mismatch... 0.03 OrthoFinder
OT_10G02070.1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.09 OrthoFinder
PTI_06G01110.1 No alias DNA mismatch repair protein MutS, core; DNA mismatch... 0.04 OrthoFinder
Sro301_g111920.1 Contig455.g6140 Protein MutS 0.06 OrthoFinder
TP03G05730.1 No alias DNA mismatch repair protein MutS, C-terminal [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54773 54773 DNA mismatch repair protein MutS, clamp; DNA mismatch... 0.02 OrthoFinder
Vocar.0013s0084.1 32896505 DNA mismatch repair protein MutS, C-terminal; DNA... 0.06 OrthoFinder
lcl|BLLF01000048.1_cds_GFH06639.1_1116 HaLaN_01304, GFH06639 DNA mismatch repair protein MSH2 0.01 OrthoFinder
lcl|BLLF01000138.1_cds_GFH08111.1_2588 HaLaN_03022, GFH08111 DNA_MISMATCH_REPAIR_2 domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491466.1_6276 KAA8491466 DNA mismatch repair protein msh-2 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 772 841
IPR000432 DNA_mismatch_repair_MutS_C 706 771
IPR007696 DNA_mismatch_repair_MutS_core 289 638
No external refs found!