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  5. Cpa|evm.model.tig00021012.40

Cpa|evm.model.tig00021012.40 (tig00021012_g17026.t1)


Aliases : tig00021012_g17026.t1

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021012.40
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
Sro1885_g303530.1 Contig262.g3246 Regulator of chromatin subfamily A-like protein 1 0.01 OrthoFinder
Vocar.0079s0020.1 32896094 G-patch domain; S1-like RNA binding domain; DBC1/CARP1... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 404 514
IPR000330 SNF2_N 117 354
No external refs found!