EOD17851

Description : Suppressor of forked [Interproscan].

Gene families : OG_01_0001807 (OrthoFinder) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD17851
Cluster	HCCA: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000605.10	tig00000605_g2475.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder
Cpa\|evm.model.tig00000605.11	tig00000605_g2478.t1	rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cre10.g428750	30790321	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder
Cz01g27020.t1	No alias	S1 domain; Suppressor of forked [Interproscan].	0.13	OrthoFinder
OT_10G00010.1	No alias	S1 domain; Suppressor of forked [Interproscan].	0.02	OrthoFinder
PTI_19G01960.1	No alias	S1 domain [Interproscan].	0.09	OrthoFinder
Sro264_g102530.1	Contig921.g9679	Protein RRP5	0.09	OrthoFinder
TP17G00890.1	No alias	Suppressor of forked [Interproscan].	0.02	OrthoFinder
Transcript_contig_69303	69303	Hypothetical protein	0.03	OrthoFinder
Transcript_contig_78480	78480	S1 domain [Interproscan].	0.05	OrthoFinder
Vocar.0005s0239.1	32883847	S1 domain; Suppressor of forked [Interproscan].	0.04	OrthoFinder
XM_002504294.1	MICPUN_107434, 107434	Hypothetical protein (RRP5)	0.09	OrthoFinder
XM_003064819.1	MicpuC2_54811, 54811	Suppressor of forked; S1 domain [Interproscan].	0.05	OrthoFinder
lcl\|BLLF01003094.1_cds_GFH26329.1_20806	HaLaN_24462, GFH26329	Suppressor of forked [Interproscan].	0.04	OrthoFinder
lcl\|BLLF01003604.1_cds_GFH27756.1_22233	HaLaN_26132, GFH27756	Hypothetical protein	0.03	OrthoFinder
lcl\|LHPG02000009.1_cds_PRW55969.1_10165	PRW55969	RNA binding rRNA processing	0.12	OrthoFinder
lcl\|LHPG02000021.1_cds_PRW20900.1_4989	PRW20900	RRP5-like protein	0.1	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497028.1_757	KAA8497028	RRNA biogenesis protein rrp5	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Enrichment
BP	GO:0003333	amino acid transmembrane transport	IEP	Enrichment
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006865	amino acid transport	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0015849	organic acid transport	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016289	CoA hydrolase activity	IEP	Enrichment
MF	GO:0016790	thiolester hydrolase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0030490	maturation of SSU-rRNA	IEP	Enrichment
MF	GO:0030515	snoRNA binding	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0032040	small-subunit processome	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:1903825	organic acid transmembrane transport	IEP	Enrichment
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR008847	Suf	1734	1823

External Links

No external refs found!

EOD17851

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation