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  5. EOD17688

EOD17688


Description : Pseudouridine synthase, TruD [Interproscan].


Gene families : OG_01_0001257 (OrthoFinder) Phylogenetic Tree(s): OG0001257_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD17688
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.44 tig00020943_g16287.t1 RNA processing.RNA... 0.02 OrthoFinder
Cre01.g007651 30789092 No description available 0.02 OrthoFinder
Cz10g14080.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz10g14090.t1 No alias Pseudouridine synthase, TruD [Interproscan]. 0.02 OrthoFinder
OT_09G01180.1 No alias Pseudouridine synthase, TruD [Interproscan]. 0.02 OrthoFinder
PTI_06G03030.1 No alias Pseudouridine synthase, TruD [Interproscan]. 0.02 OrthoFinder
Sro600_g173370.1 Contig1881.g16396 Multisubstrate pseudouridine synthase 7 0.02 OrthoFinder
Vocar.0024s0205.1 32890299 Pseudouridine synthase, TruD [Interproscan]. 0.04 OrthoFinder
XM_002500999.1 MICPUN_66033, 66033 Pseudouridine synthase, TruD [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000024.1_cds_GFH06137.1_614 HaLaN_00716, GFH06137 TRNA pseudouridine synthase D 0.03 OrthoFinder
lcl|BLLF01000024.1_cds_GFH06139.1_616 HaLaN_00718, GFH06139 TRUD domain-containing protein 0.01 OrthoFinder
lcl|BLLF01000966.1_cds_GFH16238.1_10715 HaLaN_12620, GFH16238 TRUD domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45063.1_1659 PRW45063 Multisubstrate pseudouridine synthase 7-like 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
CC GO:0001401 SAM complex IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 121 183
IPR001656 PsdUridine_synth_TruD 197 457
No external refs found!