Cpa|evm.model.tig00020961.3 (tig00020961_g16623.t1)

Aliases : tig00020961_g16623.t1

Description : ABC transporter B family member 25 OS=Oryza sativa subsp. japonica

Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020961.3
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold10331.2	10331.2	ABC transporter-like; ABC transporter type 1,...	0.01	OrthoFinder
SymbC1.scaffold708.8	708.8	ABC transporter-like; ABC transporter type 1,...	0.01	OrthoFinder
TP05G00300.1	No alias	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59338.1_7243	PRW59338	ATP-binding cassette transporter	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005891	voltage-gated calcium channel complex	IEP	Enrichment
CC	GO:0034702	ion channel complex	IEP	Enrichment
CC	GO:0034703	cation channel complex	IEP	Enrichment
CC	GO:0034704	calcium channel complex	IEP	Enrichment
CC	GO:0036128	CatSper complex	IEP	Enrichment
CC	GO:0098797	plasma membrane protein complex	IEP	Enrichment
CC	GO:1902495	transmembrane transporter complex	IEP	Enrichment
CC	GO:1990351	transporter complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	134	240
IPR011527	ABC1_TM_dom	257	350
IPR003439	ABC_transporter-like_ATP-bd	419	567

External Links

No external refs found!

Cpa|evm.model.tig00020961.3 (tig00020961_g16623.t1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation