Cpa|evm.model.tig00020961.3 (tig00020961_g16623.t1)


Aliases : tig00020961_g16623.t1

Description : ABC transporter B family member 25 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020961.3
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10331.2 10331.2 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
SymbC1.scaffold708.8 708.8 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
TP05G00300.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59338.1_7243 PRW59338 ATP-binding cassette transporter 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005891 voltage-gated calcium channel complex IEP Enrichment
CC GO:0034702 ion channel complex IEP Enrichment
CC GO:0034703 cation channel complex IEP Enrichment
CC GO:0034704 calcium channel complex IEP Enrichment
CC GO:0036128 CatSper complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 134 240
IPR011527 ABC1_TM_dom 257 350
IPR003439 ABC_transporter-like_ATP-bd 419 567
No external refs found!