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  5. EOD12459

EOD12459


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD12459
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.41 tig00000789_g4134.t1 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre04.g219750 30791451 Cell cycle.mitosis and meiosis.meiotic... 0.03 OrthoFinder
Cre12.g490150 30793094 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g16070.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Cz01g28020.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.05 OrthoFinder
Cz02g33110.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Dusal.0020s00028.1 33193689 Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.03 OrthoFinder
OT_03G01700.1 No alias Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.06 OrthoFinder
OT_04G00490.1 No alias DEAD/DEAH box helicase domain; HRDC domain; Helicase,... 0.02 OrthoFinder
OT_05G00620.1 No alias Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.03 OrthoFinder
OT_05G04280.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Sro108_g054090.1 Contig2294.g18989 Syndrome ATP-dependent helicase homolog 0.03 OrthoFinder
Sro408_g136820.1 Contig3193.g25217 Probable Werner syndrome ATP-dependent helicase homolog 1 0.05 OrthoFinder
Sro83_g044440.1 Contig4450.g33418 Syndrome ATP-dependent helicase homolog 0.02 OrthoFinder
Sro9_g007280.1 Contig4120.g31496 Probable Werner syndrome ATP-dependent helicase homolog 1 0.03 OrthoFinder
Transcript_contig_2691 2691 Helicase, C-terminal; HRDC domain; RQC domain;... 0.01 OrthoFinder
Vocar.0015s0339.1 32898912 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.03 OrthoFinder
Vocar.0018s0223.1 32898468 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
Vocar.0048s0026.1 32893654 Zinc finger, CCHC-type; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_002499883.1 MICPUN_79105, 79105 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.04 OrthoFinder
XM_002502498.1 MICPUN_50295, 50295 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003055181.1 MicpuC2_12297, 12297 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
XM_003056852.1 MicpuC2_636, 636 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003062797.1 MicpuC2_52663, 52663 ATP-dependent DNA helicase 0.02 OrthoFinder
lcl|BLLF01000272.1_cds_GFH09887.1_4364 HaLaN_05112, GFH09887 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01003204.1_cds_GFH26680.1_21157 HaLaN_24867, GFH26680 ATP-dependent DNA helicase 0.01 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05923.1_5934 PRW05923 ATP-dependent DNA helicase Q-like 3 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 40 215
IPR001650 Helicase_C 260 362
No external refs found!