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  5. EOD10686

EOD10686


Description : SET domain; Zinc finger, MYND-type [Interproscan].


Gene families : OG_01_0000019 (OrthoFinder) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD10686
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000553.27 tig00000553_g2098.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020564.37 tig00020564_g11437.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020965.56 tig00020965_g16868.t1 Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Dusal.0957s00002.1 33197875 SET domain [Interproscan]. 0.01 OrthoFinder
PTI_17G02830.1 No alias SET domain [Interproscan]. 0.03 OrthoFinder
TP05G03200.1 No alias SET domain [Interproscan]. 0.03 OrthoFinder
XM_002502912.1 MICPUN_59496, 59496 SET domain [Interproscan]. 0.02 OrthoFinder
XM_003058744.1 MicpuC2_57921, 57921 Set domain protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002893 Znf_MYND 87 120
IPR001214 SET_dom 53 255
No external refs found!