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  5. EOD10636

EOD10636


Description : Histone-binding protein RBBP4, N-terminal; WD40 repeat [Interproscan].


Gene families : OG_01_0002321 (OrthoFinder) Phylogenetic Tree(s): OG0002321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD10636
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001493.9 tig00001493_g8984.t1 No description available 0.07 OrthoFinder
Cre17.g724850 30782603 WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz06g32260.t1 No alias Histone-binding protein RBBP4, N-terminal [Interproscan]. 0.03 OrthoFinder
Cz06g32270.t1 No alias WD40 repeat [Interproscan]. 0.07 OrthoFinder
Dusal.1675s00001.1 33198115 Histone-binding protein RBBP4, N-terminal [Interproscan]. 0.02 OrthoFinder
OT_06G00690.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.1 OrthoFinder
PTI_15G02490.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.06 OrthoFinder
Sro109_g054490.1 Contig4753.g35231 Rich WD repeat-containing protein 1 0.01 OrthoFinder
Sro109_g054490.2 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.14 OrthoFinder
TP01G02670.1 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.1 OrthoFinder
Transcript_contig_89506 89506 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.07 OrthoFinder
Vocar.0001s1447.1 32885852 WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.08 OrthoFinder
XM_002500334.1 MICPUN_80233, 80233 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.13 OrthoFinder
lcl|BLLF01000177.1_cds_GFH08685.1_3162 HaLaN_03686, GFH08685 Glutamate-rich WD repeat domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59588.1_6370 PRW59588 WD40 repeat 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499516.1_8469 KAA8499516 Glutamate-rich WD repeat-containing protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 25 92
IPR001680 WD40_repeat 219 252
IPR001680 WD40_repeat 270 301
No external refs found!