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  5. EOD08792

EOD08792


Description : Helicase, C-terminal; rRNA-processing arch domain; ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD08792
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cz02g30020.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.05 OrthoFinder
Dusal.0199s00002.1 33199095 ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH... 0.02 OrthoFinder
OT_01G02950.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Ski2,... 0.02 OrthoFinder
Vocar.0001s0944.1 32886100 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.02 OrthoFinder
Vocar.0009s0027.1 32893340 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.01 OrthoFinder
XM_003056641.1 MicpuC2_32119, 32119 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495540.1_1538 KAA8495540 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 702 873
IPR011545 DEAD/DEAH_box_helicase_dom 7 153
IPR025696 rRNA_proc-arch_dom 445 613
IPR001650 Helicase_C 314 391
No external refs found!