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  5. Cpa|evm.model.tig00020927.23

Cpa|evm.model.tig00020927.23 (tig00020927_g15952.t1)


Aliases : tig00020927_g15952.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor


Gene families : OG_01_0002703 (OrthoFinder) Phylogenetic Tree(s): OG0002703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020927.23
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre03.g196850 30787480 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cz10g12180.t1 No alias U3 small nucleolar RNA-associated protein 15,... 0.02 OrthoFinder
EOD28493 No alias U3 small nucleolar RNA-associated protein 15,... 0.04 OrthoFinder
EOD39299 No alias U3 small nucleolar RNA-associated protein 15,... 0.05 OrthoFinder
OT_15G01400.1 No alias WD40 repeat; U3 small nucleolar RNA-associated protein... 0.03 OrthoFinder
PTI_02G05950.1 No alias U3 small nucleolar RNA-associated protein 15,... 0.05 OrthoFinder
Sro203_g085690.1 Contig1270.g11863 Associated protein 15 homolog 0.04 OrthoFinder
Vocar.0011s0312.1 32895259 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.02 OrthoFinder
XM_002502959.1 MICPUN_108508, 108508 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.06 OrthoFinder
XM_003058696.1 MicpuC2_67965, 67965 U3 small nucleolar RNA-associated protein 15,... 0.04 OrthoFinder
lcl|BLLF01002027.1_cds_GFH22370.1_16847 HaLaN_19826, GFH22370 WD_REPEATS_REGION domain-containing protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497875.1_6828 KAA8497875 U3 small nucleolar RNA-associated protein 15-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 222 260
IPR001680 WD40_repeat 183 217
IPR001680 WD40_repeat 115 176
IPR018983 U3_snoRNA-assocProt_15_C 340 477
No external refs found!