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  5. Cpa|evm.model.tig00020909.42

Cpa|evm.model.tig00020909.42 (tig00020909_g15363.t1)


Aliases : tig00020909_g15363.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component


Gene families : OG_01_0002109 (OrthoFinder) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020909.42
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre12.g537800 30791776, RPL7 Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 OrthoFinder
Cz10g26010.t1 No alias Hypothetical protein 0.14 OrthoFinder
Dusal.1371s00001.1 33191881 Ribosomal protein L30, ferredoxin-like fold domain;... 0.28 OrthoFinder
EOD11472 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.22 OrthoFinder
EOD41169 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.22 OrthoFinder
OT_03G01610.1 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.17 OrthoFinder
PTI_19G01830.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.37 OrthoFinder
Sro264_g102550.1 Contig921.g9681 60S ribosomal protein L7 0.41 OrthoFinder
SymbC1.scaffold680.2 680.2 Ribosomal protein L30, ferredoxin-like fold domain;... 0.12 OrthoFinder
TP02G06700.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.26 OrthoFinder
Vocar.0034s0005.1 32893109 Ribosomal protein L30, N-terminal; Ribosomal protein... 0.13 OrthoFinder
XM_002500889.1 MICPUN_106801, 106801 Ribosomal protein L30, ferredoxin-like fold domain;... 0.24 OrthoFinder
XM_003056432.1 MicpuC2_31664, 31664 Ribosomal protein L30, ferredoxin-like fold domain;... 0.04 OrthoFinder
lcl|BLLF01000405.1_cds_GFH11454.1_5931 HaLaN_06953, GFH11454 Ribosomal protein L30, N-terminal [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14862.1_9339 HaLaN_10989, GFH14862 Ribosomal protein L30, ferredoxin-like fold domain;... 0.11 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20371.1_5557 PRW20371 60S ribosomal L7-2 0.3 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499623.1_8576 KAA8499623 60S ribosomal protein L7-4 0.17 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 49 119
IPR016082 Ribosomal_L30_ferredoxin-like 125 175
No external refs found!