Description : U3 small nucleolar RNA-associated protein 6 [Interproscan].
Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: EOD04628 | |
Cluster | HCCA: Cluster_112 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000571.29 | tig00000571_g2183.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder | |
Cre10.g442000 | 30790656 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder | |
Cz03g13170.t1 | No alias | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.09 | OrthoFinder | |
Dusal.0174s00015.1 | 33196283 | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.04 | OrthoFinder | |
EOD34666 | No alias | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.02 | OrthoFinder | |
PTI_08G02440.1 | No alias | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.13 | OrthoFinder | |
Sro757_g197930.1 | Contig322.g4282 | RNA-associated protein 6 homolog | 0.12 | OrthoFinder | |
TP16G00520.1 | No alias | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.04 | OrthoFinder | |
Transcript_contig_66361 | 66361 | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.04 | OrthoFinder | |
Vocar.0001s1250.1 | 32884322 | U3 small nucleolar RNA-associated protein 6 [Interproscan]. | 0.01 | OrthoFinder | |
lcl|BLLF01005177.1_cds_GFH30837.1_25314 | HaLaN_29763, GFH30837 | Hypothetical protein | 0.02 | OrthoFinder | |
lcl|LHPG02000007.1_cds_PRW57423.1_9057 | PRW57423 | U3 small nucleolar RNA-associated 6-like protein | 0.08 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8499489.1_8442 | KAA8499489 | U3 small nucleolar RNA-associated protein 6 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEA | Interproscan |
MF | GO:0030515 | snoRNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | IEP | Enrichment |
MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004399 | histidinol dehydrogenase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005575 | cellular_component | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006400 | tRNA modification | IEP | Enrichment |
BP | GO:0006547 | histidine metabolic process | IEP | Enrichment |
BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | Enrichment |
BP | GO:0008104 | protein localization | IEP | Enrichment |
MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
BP | GO:0015031 | protein transport | IEP | Enrichment |
BP | GO:0016042 | lipid catabolic process | IEP | Enrichment |
BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
MF | GO:0016289 | CoA hydrolase activity | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016790 | thiolester hydrolase activity | IEP | Enrichment |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
CC | GO:0030117 | membrane coat | IEP | Enrichment |
CC | GO:0030120 | vesicle coat | IEP | Enrichment |
CC | GO:0030127 | COPII vesicle coat | IEP | Enrichment |
CC | GO:0030684 | preribosome | IEP | Enrichment |
CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
CC | GO:0043226 | organelle | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
BP | GO:0046907 | intracellular transport | IEP | Enrichment |
BP | GO:0048193 | Golgi vesicle transport | IEP | Enrichment |
BP | GO:0051641 | cellular localization | IEP | Enrichment |
BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
BP | GO:0071702 | organic substance transport | IEP | Enrichment |
BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013949 | Utp6 | 9 | 97 |
No external refs found! |