- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 33198115
Description : Histone-binding protein RBBP4, N-terminal [Interproscan].
Gene families : OG_01_0002321 (OrthoFinder) Phylogenetic Tree(s): OG0002321_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dusal.1675s00001.1 | |
| Cluster | HCCA: Cluster_115 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001493.9 | tig00001493_g8984.t1 | No description available | 0.02 | OrthoFinder | |
| Cre17.g724850 | 30782603 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Cz06g32270.t1 | No alias | WD40 repeat [Interproscan]. | 0.03 | OrthoFinder | |
| EOD10636 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.02 | OrthoFinder | |
| PTI_15G02490.1 | No alias | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.02 | OrthoFinder | |
| Sro109_g054490.1 | Contig4753.g35231 | Rich WD repeat-containing protein 1 | 0.02 | OrthoFinder | |
| Sro109_g054490.2 | No alias | WD40 repeat; Histone-binding protein RBBP4, N-terminal... | 0.03 | OrthoFinder | |
| TP01G02670.1 | No alias | WD40 repeat; Histone-binding protein RBBP4, N-terminal... | 0.03 | OrthoFinder | |
| Transcript_contig_89506 | 89506 | Histone-binding protein RBBP4, N-terminal; WD40 repeat... | 0.05 | OrthoFinder | |
| Vocar.0001s1447.1 | 32885852 | WD40 repeat; Histone-binding protein RBBP4, N-terminal... | 0.02 | OrthoFinder | |
| lcl|BLLF01000177.1_cds_GFH08685.1_3162 | HaLaN_03686, GFH08685 | Glutamate-rich WD repeat domain-containing protein | 0.02 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59588.1_6370 | PRW59588 | WD40 repeat | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000149 | SNARE binding | IEP | Enrichment |
| BP | GO:0000154 | rRNA modification | IEP | Enrichment |
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| CC | GO:0000313 | organellar ribosome | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005761 | mitochondrial ribosome | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006813 | potassium ion transport | IEP | Enrichment |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Enrichment |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| MF | GO:0015298 | solute:cation antiporter activity | IEP | Enrichment |
| MF | GO:0015299 | solute:proton antiporter activity | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016311 | dephosphorylation | IEP | Enrichment |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Enrichment |
| MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| MF | GO:0019905 | syntaxin binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Enrichment |
| MF | GO:0071949 | FAD binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022052 | Histone-bd_RBBP4_N | 49 | 116 |
| No external refs found! |