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  5. Dusal.0632s00003.1

Dusal.0632s00003.1 (33192367)


Aliases : 33192367

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain; rRNA-processing arch domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0632s00003.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
PTI_28G01510.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.02 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.01 OrthoFinder
Sro55_g032450.1 Contig4458.g33519 Viralicidic activity 2-like 2 0.02 OrthoFinder
Sro587_g171320.1 Contig2233.g18555 Viralicidic activity 2-like 2 0.01 OrthoFinder
SymbC1.scaffold1319.4 1319.4 ATP-dependent RNA helicase Ski2, C-terminal [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold1465.1 1465.1 DEAD/DEAH box helicase domain; DNA2/NAM7 helicase-like,... 0.02 OrthoFinder
Transcript_contig_53802 53802 ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH... 0.01 OrthoFinder
Transcript_contig_78793 78793 ATP-dependent RNA helicase Ski2, C-terminal;... 0.01 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.02 OrthoFinder
XM_002506163.1 MICPUN_88392, 88392 ATP-dependent RNA helicase Ski2, C-terminal;... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 49 195
IPR001650 Helicase_C 355 441
IPR025696 rRNA_proc-arch_dom 506 604
No external refs found!