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  5. Cpa|evm.model.tig00020848.22

Cpa|evm.model.tig00020848.22 (tig00020848_g14549.t1)


Aliases : tig00020848_g14549.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp4 assembly factor


Gene families : OG_01_0003098 (OrthoFinder) Phylogenetic Tree(s): OG0003098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020848.22
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre10.g454100 30790171 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cz04g21140.t1 No alias Brix domain [Interproscan]. 0.02 OrthoFinder
EOD06509 No alias Brix domain [Interproscan]. 0.03 OrthoFinder
OT_14G00170.1 No alias Brix domain [Interproscan]. 0.04 OrthoFinder
PTI_11G02620.1 No alias Brix domain [Interproscan]. 0.03 OrthoFinder
Sro946_g223250.1 Contig2147.g18085 Nucleolar ribonucleoprotein protein IMP4 0.07 OrthoFinder
TP19G00980.1 No alias Brix domain [Interproscan]. 0.08 OrthoFinder
XM_002505531.1 MICPUN_87683, 87683 Brix domain [Interproscan]. 0.04 OrthoFinder
XM_003063644.1 MicpuC2_22905, 22905 Brix domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44924.1_1784 PRW44924 U3 small nucleolar ribonucleo IMP4 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495703.1_1701 KAA8495703 U3 small nucleolar ribonucleoprotein IMP4 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007109 Brix 90 240
No external refs found!