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  5. Dusal.0533s00011.1

Dusal.0533s00011.1 (33189083)


Aliases : 33189083

Description : Sec23/Sec24, trunk domain; Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain [Interproscan].


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0533s00011.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_58293 58293 Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain;... 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59573.1_6417 PRW59573 Transport Sec24-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004126 cytidine deaminase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Enrichment
BP GO:0006216 cytidine catabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009164 nucleoside catabolic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009972 cytidine deamination IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Enrichment
BP GO:0042454 ribonucleoside catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046087 cytidine metabolic process IEP Enrichment
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Enrichment
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Enrichment
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901658 glycosyl compound catabolic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006900 Sec23/24_helical_dom 315 418
IPR012990 Sec23_24_beta_S 220 304
IPR006896 Sec23/24_trunk_dom 30 214
No external refs found!