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  5. Dusal.0453s00001.1

Dusal.0453s00001.1 (33187619)


Aliases : 33187619

Description : 40S ribosomal protein S4, C-terminal domain; Ribosomal protein S4e, central region; Ribosomal protein S4e, N-terminal; RNA-binding S4 domain [Interproscan].


Gene families : OG_01_0003378 (OrthoFinder) Phylogenetic Tree(s): OG0003378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0453s00001.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021433.38 tig00021433_g21290.t1 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cre06.g308250 30778562, RPS4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
EOD21843 No alias 40S ribosomal protein S4 [Ensembl]. 0.03 OrthoFinder
OT_17G01340.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
PTI_01G02680.1 No alias Ribosomal protein S4e, N-terminal; KOW; 40S ribosomal... 0.03 OrthoFinder
Sro611_g175310.1 Contig1882.g16412 40S ribosomal protein S4 0.02 OrthoFinder
TP02G09320.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
Vocar.0009s0158.1 32893178 Ribosomal protein S4e, central region; RNA-binding S4... 0.02 OrthoFinder
XM_002502201.1 MICPUN_90851, 90851 KOW; 40S ribosomal protein S4, C-terminal domain;... 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56747.1_9789 PRW56747 40S ribosomal X isoform 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 44 90
IPR032277 40S_S4_C 212 257
IPR013843 Ribosomal_S4e_N 3 39
IPR013845 Ribosomal_S4e_central_region 95 169
No external refs found!