Dusal.0327s00002.1 (33200457)

Aliases : 33200457

Description : Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding; PROCT domain; PRO8NT domain; RNA recognition motif, spliceosomal PrP8; PROCN domain; Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; PRP8 domain IV core [Interproscan].

Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dusal.0327s00002.1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000093.136	tig00000093_g3562.t1	Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana	0.03	OrthoFinder
Cpa\|evm.model.tig00000093.137	tig00000093_g3562.t1	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder
Cre01.g016050	30789071, PRP8	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	OrthoFinder
Cz07g16060.t1	No alias	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;...	0.02	OrthoFinder
EOD24715	No alias	PROCT domain; RNA recognition motif, spliceosomal PrP8;...	0.06	OrthoFinder
OT_11G00220.1	No alias	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;...	0.02	OrthoFinder
Sro281_g107170.1	Contig3786.g29056	Processing-splicing factor 8	0.02	OrthoFinder
Transcript_contig_53842	53842	PROCT domain; Pre-mRNA-processing-splicing factor 8,...	0.02	OrthoFinder
XM_003061325.1	MicpuC2_48200, 48200	PROCN domain; PROCT domain; Pre-mRNA-processing-splicing...	0.03	OrthoFinder
lcl\|BLLF01000102.1_cds_GFH07545.1_2022	HaLaN_02363, GFH07545	MPN domain-containing protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	Interproscan
MF	GO:0030623	U5 snRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0005507	copper ion binding	IEP	Enrichment
MF	GO:0005543	phospholipid binding	IEP	Enrichment
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Enrichment
CC	GO:0005666	RNA polymerase III complex	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0006383	transcription by RNA polymerase III	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006811	ion transport	IEP	Enrichment
MF	GO:0008289	lipid binding	IEP	Enrichment
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Enrichment
MF	GO:0015075	ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Enrichment
BP	GO:0015696	ammonium transport	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Enrichment
CC	GO:0030131	clathrin adaptor complex	IEP	Enrichment
CC	GO:0030880	RNA polymerase complex	IEP	Enrichment
MF	GO:0031491	nucleosome binding	IEP	Enrichment
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0044877	protein-containing complex binding	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR019582	RRM_spliceosomal_PrP8	948	1038
IPR019581	Prp8_U5-snRNA-bd	1172	1305
IPR012591	PRO8NT	60	115
IPR021983	PRP8_domainIV	1722	1951
IPR012592	PROCN	358	763
IPR019580	Prp8_U6-snRNA-bd	1404	1562
IPR012984	PROCT	2176	2294

External Links

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Dusal.0327s00002.1 (33200457)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation