Dusal.0327s00002.1 (33200457)


Aliases : 33200457

Description : Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding; PROCT domain; PRO8NT domain; RNA recognition motif, spliceosomal PrP8; PROCN domain; Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; PRP8 domain IV core [Interproscan].


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0327s00002.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.136 tig00000093_g3562.t1 Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00000093.137 tig00000093_g3562.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Cre01.g016050 30789071, PRP8 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder
Cz07g16060.t1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.02 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.06 OrthoFinder
OT_11G00220.1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.02 OrthoFinder
Sro281_g107170.1 Contig3786.g29056 Processing-splicing factor 8 0.02 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.02 OrthoFinder
XM_003061325.1 MicpuC2_48200, 48200 PROCN domain; PROCT domain; Pre-mRNA-processing-splicing... 0.03 OrthoFinder
lcl|BLLF01000102.1_cds_GFH07545.1_2022 HaLaN_02363, GFH07545 MPN domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
MF GO:0005544 calcium-dependent phospholipid binding IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR019582 RRM_spliceosomal_PrP8 948 1038
IPR019581 Prp8_U5-snRNA-bd 1172 1305
IPR012591 PRO8NT 60 115
IPR021983 PRP8_domainIV 1722 1951
IPR012592 PROCN 358 763
IPR019580 Prp8_U6-snRNA-bd 1404 1562
IPR012984 PROCT 2176 2294
No external refs found!