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  5. Dusal.0215s00007.1

Dusal.0215s00007.1 (33185751)


Aliases : 33185751

Description : Helicase, C-terminal; SNF2-related, N-terminal domain; Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0215s00007.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000378.31 tig00000378_g24522.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020614.60 tig00020614_g12173.t1 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder
Cpa|evm.model.tig00021014.10 tig00021014_g17092.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz10g28060.t1 No alias SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.02 OrthoFinder
EOD24624 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD35283 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.05 OrthoFinder
PTI_12G03810.1 No alias Helicase, C-terminal; Zinc finger, PARP-type;... 0.01 OrthoFinder
Sro298_g110990.1 Contig4399.g33030 Regulator of chromatin subfamily A member 3-like 1 0.01 OrthoFinder
Transcript_contig_89503 89503 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
XM_002499864.1 MICPUN_56440, 56440 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01001332.1_cds_GFH18644.1_13121 HaLaN_15483, GFH18644 ATP-dependent helicase rhp16 0.02 OrthoFinder
lcl|BLLF01003358.1_cds_GFH27123.1_21600 HaLaN_25391, GFH27123 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492265.1_5448 KAA8492265 Putative SWI/SNF-related matrix-associated... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015109 chromate transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0015703 chromate transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 675 745
IPR000330 SNF2_N 12 368
IPR001841 Znf_RING 1196 1241
IPR001650 Helicase_C 1298 1412
No external refs found!