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  5. Dusal.0187s00024.1

Dusal.0187s00024.1 (33194151)


Aliases : 33194151

Description : DNA topoisomerase, type IA, central; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0187s00024.1
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001466.15 tig00001466_g8791.t1 DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cz06g27170.t1 No alias DNA topoisomerase, type IA, central; TOPRIM domain... 0.03 OrthoFinder
Cz16g12180.t1 No alias DNA topoisomerase, type IA, central; Zinc finger,... 0.02 OrthoFinder
EOD41689 No alias DNA topoisomerase, type IA, central [Interproscan]. 0.02 OrthoFinder
Sro287_g108620.1 Contig252.g3103 Topoisomerase 3-alpha 0.01 OrthoFinder
Sro311_g114400.1 Contig909.g9555 Dependent RNA helicase 0.01 OrthoFinder
Vocar.0009s0242.1 32893315 Zinc finger, CCHC-type; TOPRIM domain; DNA... 0.02 OrthoFinder
XM_002500198.1 MICPUN_79081, 79081 DNA topoisomerase, type IA, central; TOPRIM domain... 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493337.1_9638 KAA8493337 DNA topoisomerase 3-beta 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 4 163
IPR001878 Znf_CCHC 444 461
No external refs found!