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  5. Dusal.0179s00021.1

Dusal.0179s00021.1 (33190114)


Aliases : 33190114

Description : WD40 repeat; NLE [Interproscan].


Gene families : OG_01_0003560 (OrthoFinder) Phylogenetic Tree(s): OG0003560_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0179s00021.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre17.g710100 30782724 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cz05g29110.t1 No alias WD40 repeat; NLE [Interproscan]. 0.04 OrthoFinder
EOD41420 No alias WD40 repeat; NLE [Interproscan]. 0.02 OrthoFinder
OT_01G05290.1 No alias NLE; WD40 repeat [Interproscan]. 0.05 OrthoFinder
PTI_02G04040.1 No alias WD40 repeat; NLE [Interproscan]. 0.04 OrthoFinder
Sro2353_g324440.1 Contig3833.g29477 Ribosome biogenesis protein WDR12 0.03 OrthoFinder
SymbC1.scaffold1102.1 1102.1 WD40 repeat; Ion transport domain; NLE [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33193.1_3572 PRW33193 Ribosome biogenesis WDR12-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 275 311
IPR001680 WD40_repeat 191 226
IPR001680 WD40_repeat 140 179
IPR001680 WD40_repeat 100 128
IPR012972 NLE 7 70
No external refs found!