Cpa|evm.model.tig00020780.48 (tig00020780_g13797.t2)


Aliases : tig00020780_g13797.t2

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.48
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cre16.g677382 30777694 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder
Cz10g17100.t1 No alias Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
Dusal.0270s00001.1 33190010 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
EOD11048 No alias Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
EOD36531 No alias SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
EOD39718 No alias Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
PTI_06G00320.1 No alias Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
PTI_20G01740.1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Sro87_g046050.1 Contig2014.g17213 Myb-related protein A 0.01 OrthoFinder
Transcript_contig_55654 55654 SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57499 57499 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1620.1 32884611 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000902.1_cds_GFH15798.1_10275 HaLaN_12098, GFH15798 Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45035.1_1994 PRW45035 Homeodomain 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497884.1_6837 KAA8497884 Myb-related protein B 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498292.1_7245 KAA8498292 Transcriptional activator Myb 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499442.1_8395 KAA8499442 Transcription factor MYB52 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494855.1_3385 KAA8494855 Transcription factor 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493266.1_9567 KAA8493266 Transcription factor MYB44 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492832.1_2568 KAA8492832 Transcriptional activator Myb 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492231.1_5414 KAA8492231 Myb-like protein L 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 27 74
No external refs found!