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  5. Cpa|evm.model.tig00020780.16

Cpa|evm.model.tig00020780.16 (tig00020780_g13769.t1)


Aliases : tig00020780_g13769.t1

Description : Probable GTP-binding protein OBGC1, chloroplastic OS=Oryza sativa subsp. indica


Gene families : OG_01_0000470 (OrthoFinder) Phylogenetic Tree(s): OG0000470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.16
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cre09.g395600 30780716 Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.02 OrthoFinder
Cz02g10010.t1 No alias GTP1/OBG domain; GTP binding domain [Interproscan]. 0.03 OrthoFinder
OT_07G04130.1 No alias GTP binding domain; GTP1/OBG domain [Interproscan]. 0.02 OrthoFinder
Sro621_g176740.1 Contig1511.g13791 GTPase Obg 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491832.1_4840 KAA8491832 GTPase Obg 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR015349 OCT_dom 542 610
IPR006073 GTP-bd 324 466
IPR006169 GTP1_OBG_dom 189 221
IPR006169 GTP1_OBG_dom 264 321
No external refs found!