Dusal.0041s00032.1 (33194551)

Aliases : 33194551

Description : Ribosomal protein L13e [Interproscan].

Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Dusal.0041s00032.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020629.36 tig00020629_g12358.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cre14.g630100 30776357, RPL13 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz15g22130.t1 No alias Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan]. 0.12 OrthoFinder
EOD29349 No alias 60S ribosomal protein L13 [Ensembl]. 0.06 OrthoFinder
OT_05G05020.1 No alias Ribosomal protein L13e [Interproscan]. 0.05 OrthoFinder
PTI_20G02450.1 No alias Ribosomal protein L13e [Interproscan]. 0.17 OrthoFinder
Sro307_g113390.1 Contig2839.g22809 60S ribosomal protein L13-1 0.15 OrthoFinder
SymbC1.scaffold5728.4 5728.4 Ribosomal protein L13e [Interproscan]. 0.07 OrthoFinder
TP04G08470.1 No alias Ribosomal protein L13e [Interproscan]. 0.15 OrthoFinder
XM_002502479.1 MICPUN_90780, 90780 Ribosomal protein L13e [Interproscan]. 0.1 OrthoFinder
XM_003056868.1 MicpuC2_62462, 62462 Ribosomal protein L13e [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001412.1_cds_GFH19137.1_13614 HaLaN_16038, GFH19137 60S ribosomal protein L13 0.05 OrthoFinder
lcl|BLLF01008736.1_cds_GFH33502.1_27979 HaLaN_32883, GFH33502 60S ribosomal protein L13 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61522.1_672 PRW61522 60S ribosomal L13-2 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491921.1_4929 KAA8491921 60S ribosomal protein L13-1 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0005544 calcium-dependent phospholipid binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010167 response to nitrate IEP Enrichment
BP GO:0015706 nitrate transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1901698 response to nitrogen compound IEP Enrichment
BP GO:1901700 response to oxygen-containing compound IEP Enrichment
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 6 184
No external refs found!