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Aliases : 976.2
Description : Ribosomal RNA small subunit methyltransferase F, N-terminal; Pentatricopeptide repeat; SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].
Gene families : OG_01_0010055 (OrthoFinder) Phylogenetic Tree(s): OG0010055_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold976.2 | |
| Cluster | HCCA: Cluster_15 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003774 | motor activity | IEP | Enrichment |
| MF | GO:0003777 | microtubule motor activity | IEP | Enrichment |
| MF | GO:0005319 | lipid transporter activity | IEP | Enrichment |
| MF | GO:0005509 | calcium ion binding | IEP | Enrichment |
| CC | GO:0005875 | microtubule associated complex | IEP | Enrichment |
| BP | GO:0006359 | regulation of transcription by RNA polymerase III | IEP | Enrichment |
| BP | GO:0006869 | lipid transport | IEP | Enrichment |
| BP | GO:0006928 | movement of cell or subcellular component | IEP | Enrichment |
| BP | GO:0007017 | microtubule-based process | IEP | Enrichment |
| BP | GO:0007018 | microtubule-based movement | IEP | Enrichment |
| MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | Enrichment |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016480 | negative regulation of transcription by RNA polymerase III | IEP | Enrichment |
| CC | GO:0030286 | dynein complex | IEP | Enrichment |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| MF | GO:0043169 | cation binding | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0045892 | negative regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| MF | GO:0046872 | metal ion binding | IEP | Enrichment |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Enrichment |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Enrichment |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Enrichment |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001678 | MeTrfase_RsmB/NOP2 | 474 | 662 |
| IPR031341 | Methyltr_RsmF_N | 389 | 459 |
| IPR002885 | Pentatricopeptide_repeat | 871 | 920 |
| IPR002885 | Pentatricopeptide_repeat | 971 | 1019 |
| IPR002885 | Pentatricopeptide_repeat | 939 | 967 |
| IPR002885 | Pentatricopeptide_repeat | 1043 | 1071 |
| IPR002885 | Pentatricopeptide_repeat | 797 | 854 |
| No external refs found! |