SymbC1.scaffold9.690 (9.690)

Aliases : 9.690

Description : Protein of unknown function DUF1501; Domain of unknown function DUF1553; Translational regulator CsrA; DNA polymerase III, gamma subunit, domain III; Stage V sporulation protein G; GHMP kinase N-terminal domain; DNA polymerase III, delta subunit; Domain of unknown function DUF1549; Peptidase, C-terminal, archaeal/bacterial; WD40 repeat; Cytochrome C, Planctomycete-type [Interproscan].

Gene families : OG_01_0001322 (OrthoFinder) Phylogenetic Tree(s): OG0001322_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold9.690
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold14578.1 14578.1 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold27051.1 27051.1 Domain of unknown function DUF1549 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold39125.1 39125.1 Domain of unknown function DUF1553 [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006109 regulation of carbohydrate metabolic process IEA Interproscan
BP GO:0006402 mRNA catabolic process IEA Interproscan
BP GO:0030435 sporulation resulting in formation of a cellular spore IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR003751 CsrA 634 680
IPR011429 Cyt_c_Planctomycete-type 2840 2895
IPR007280 Peptidase_C_arc/bac 1346 1415
IPR007280 Peptidase_C_arc/bac 1531 1600
IPR010869 DUF1501 827 1207
IPR011444 DUF1549 2294 2478
IPR022754 DNA_pol_III_gamma-3 5135 5270
IPR001680 WD40_repeat 3131 3162
IPR001680 WD40_repeat 3088 3121
IPR001680 WD40_repeat 3167 3203
IPR006204 GHMP_kinase_N_dom 149 203
IPR022655 DUF1553 2524 2748
IPR007170 SpoVG 334 451
No external refs found!