SymbC1.scaffold9.690 (9.690)

Aliases : 9.690

Description : Protein of unknown function DUF1501; Domain of unknown function DUF1553; Translational regulator CsrA; DNA polymerase III, gamma subunit, domain III; Stage V sporulation protein G; GHMP kinase N-terminal domain; DNA polymerase III, delta subunit; Domain of unknown function DUF1549; Peptidase, C-terminal, archaeal/bacterial; WD40 repeat; Cytochrome C, Planctomycete-type [Interproscan].

Gene families : OG_01_0001322 (OrthoFinder) Phylogenetic Tree(s): OG0001322_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold9.690
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold14578.1	14578.1	Domain of unknown function DUF1549; Domain of unknown...	0.03	OrthoFinder
SymbC1.scaffold27051.1	27051.1	Domain of unknown function DUF1549 [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold39125.1	39125.1	Domain of unknown function DUF1553 [Interproscan].	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006109	regulation of carbohydrate metabolic process	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004803	transposase activity	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006547	histidine metabolic process	IEP	Enrichment
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0015696	ammonium transport	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0042597	periplasmic space	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003751	CsrA	634	680
IPR011429	Cyt_c_Planctomycete-type	2840	2895
IPR007280	Peptidase_C_arc/bac	1346	1415
IPR007280	Peptidase_C_arc/bac	1531	1600
IPR010869	DUF1501	827	1207
IPR011444	DUF1549	2294	2478
IPR022754	DNA_pol_III_gamma-3	5135	5270
IPR001680	WD40_repeat	3131	3162
IPR001680	WD40_repeat	3088	3121
IPR001680	WD40_repeat	3167	3203
IPR006204	GHMP_kinase_N_dom	149	203
IPR022655	DUF1553	2524	2748
IPR007170	SpoVG	334	451

External Links

No external refs found!

SymbC1.scaffold9.690 (9.690)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation