SymbC1.scaffold9.541 (9.541)

Aliases : 9.541

Description : 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; Peptidase S49; Peptidase M50; PDZ domain 6; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; DXP reductoisomerase C-terminal domain [Interproscan].

Gene families : OG_01_0001587 (OrthoFinder) Phylogenetic Tree(s): OG0001587_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold9.541
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
PTI_01G10890.1	No alias	DXP reductoisomerase C-terminal domain;...	0.01	OrthoFinder
SymbC1.scaffold13535.3	13535.3	PDZ domain; PDZ domain 6; DXP reductoisomerase...	0.03	OrthoFinder
SymbC1.scaffold21.235	21.235	1-deoxy-D-xylulose 5-phosphate reductoisomerase,...	0.05	OrthoFinder
Vocar.0007s0155.1	32888299	1-deoxy-D-xylulose 5-phosphate reductoisomerase,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	IEA	Interproscan
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0050661	NADP binding	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
MF	GO:0070402	NADPH binding	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
MF	GO:0004127	cytidylate kinase activity	IEP	Enrichment
BP	GO:0006541	glutamine metabolic process	IEP	Enrichment
BP	GO:0006542	glutamine biosynthetic process	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0015002	obsolete heme-copper terminal oxidase activity	IEP	Enrichment
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Enrichment
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Enrichment
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR008915	Peptidase_M50	383	1029
IPR013512	DXP_reductoisomerase_N	8	134
IPR002142	Peptidase_S49	1224	1328
IPR041489	PDZ_6	705	733
IPR041489	PDZ_6	532	563
IPR041489	PDZ_6	625	672
IPR026877	DXPR_C	263	374
IPR013644	DXP_reductoisomerase_C	148	231

External Links

No external refs found!

SymbC1.scaffold9.541 (9.541)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation