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  5. SymbC1.scaffold87.58

SymbC1.scaffold87.58 (87.58)


Aliases : 87.58

Description : Chaperonin Cpn60/TCP-1 family; GroES chaperonin family [Interproscan].


Gene families : OG_01_0000322 (OrthoFinder) Phylogenetic Tree(s): OG0000322_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold87.58
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001107.20 tig00001107_g7104.t1 RuBisCO large subunit-binding protein subunit alpha,... 0.01 OrthoFinder
Cpa|evm.model.tig00001269.7 tig00001269_g7978.t1 External stimuli response.temperature.Hsp... 0.01 OrthoFinder
Cz03g15060.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.01 OrthoFinder
EOD15264 No alias Heat shock protein 60 [Ensembl]. 0.02 OrthoFinder
EOD29151 No alias Heat shock protein 60 [Ensembl]. 0.01 OrthoFinder
SymbC1.scaffold11.172 11.172 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
Vocar.0015s0099.1 32898971 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61354.1_599 PRW61354 Ru large subunit-binding subunit chloroplastic isoform A 0.01 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44921.1_1734 PRW44921 Chaperonin mitochondrial 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006457 protein folding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004560 alpha-L-fucosidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009432 SOS response IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009991 response to extracellular stimulus IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0015928 fucosidase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0031668 cellular response to extracellular stimulus IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051302 regulation of cell division IEP Enrichment
BP GO:0051782 negative regulation of cell division IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071496 cellular response to external stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 115 616
IPR020818 Chaperonin_GroES 13 102
No external refs found!