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  5. SymbC1.scaffold84.10

SymbC1.scaffold84.10 (84.10)


Aliases : 84.10

Description : Cyclic nucleotide-binding domain; Ion transport domain [Interproscan].


Gene families : OG_01_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold84.10
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000851.5 tig00000851_g4889.t1 Putative cyclic nucleotide-gated ion channel 8... 0.02 OrthoFinder
Cpa|evm.model.tig00001127.26 tig00001127_g7159.t1 Potassium channel KAT1 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cpa|evm.model.tig00001264.2 tig00001264_g7859.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00021348.58 tig00021348_g20561.t1 Putative cyclic nucleotide-gated ion channel 8... 0.02 OrthoFinder
Cre06.g278111 30779218 Potassium channel AKT2/3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre17.g706900 30782036, CNG3 Solute transport.channels.VIC superfamily.voltage-gated... 0.03 OrthoFinder
Cz05g22050.t1 No alias Ion transport domain [Interproscan]. 0.02 OrthoFinder
Cz05g35200.t1 No alias Ion transport domain; Cyclic nucleotide-binding domain... 0.02 OrthoFinder
Dusal.0329s00009.1 33198134 Cyclic nucleotide-binding domain; Ion transport domain... 0.02 OrthoFinder
OT_13G00610.1 No alias Ion transport domain; Cyclic nucleotide-binding domain... 0.03 OrthoFinder
TP05G05200.1 No alias EF-hand domain; Cyclic nucleotide-binding domain; Ion... 0.02 OrthoFinder
TP18G01730.1 No alias Hypothetical protein 0.02 OrthoFinder
XM_002501258.1 MICPUN_99962, 99962 Voltage-gated ion channel superfamily 0.02 OrthoFinder
lcl|BLLF01000135.1_cds_GFH08070.1_2547 HaLaN_02975, GFH08070 Cyclic nucleotide-binding domain-containing protein 0.01 OrthoFinder
lcl|BLLF01000135.1_cds_GFH08072.1_2549 HaLaN_02978, GFH08072 Cyclic nucleotide-binding domain-containing protein 0.01 OrthoFinder
lcl|BLLF01000349.1_cds_GFH10809.1_5286 HaLaN_06192, GFH10809 Cyclic nucleotide-binding domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000349.1_cds_GFH10810.1_5287 HaLaN_06193, GFH10810 Cyclic nucleotide-binding domain-containing protein 0.01 OrthoFinder
lcl|BLLF01001221.1_cds_GFH17913.1_12390 HaLaN_14637, GFH17913 Cyclic nucleotide-binding domain-containing protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 449 545
IPR005821 Ion_trans_dom 90 339
No external refs found!