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  5. SymbC1.scaffold7628.1

SymbC1.scaffold7628.1 (7628.1)


Aliases : 7628.1

Description : Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal [Interproscan].


Gene families : OG_01_0003120 (OrthoFinder) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold7628.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001339.27 tig00001339_g8284.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder
Cre12.g528750 30793215, RPL12 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cz05g19110.t1 No alias Ribosomal protein L11, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD41717 No alias Ribosomal protein L11, C-terminal [Interproscan]. 0.02 OrthoFinder
OT_03G05460.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.02 OrthoFinder
PTI_14G02490.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.04 OrthoFinder
Sro82_g043980.1 Contig4032.g30989 60S ribosomal protein L12 (Fragment) 0.05 OrthoFinder
TP02G01920.1 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.05 OrthoFinder
XM_002507253.1 MICPUN_106714, 106714 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.03 OrthoFinder
XM_003054785.1 MicpuC2_30629, 30629 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45184.1_1960 PRW45184 60S ribosomal L12-1 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495636.1_1634 KAA8495636 60S ribosomal protein L12 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
BP GO:0010466 negative regulation of peptidase activity IEP Enrichment
BP GO:0010941 regulation of cell death IEP Enrichment
BP GO:0010951 negative regulation of endopeptidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016032 viral process IEP Enrichment
BP GO:0019079 viral genome replication IEP Enrichment
BP GO:0030162 regulation of proteolysis IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Enrichment
BP GO:0042981 regulation of apoptotic process IEP Enrichment
BP GO:0043066 negative regulation of apoptotic process IEP Enrichment
BP GO:0043067 regulation of programmed cell death IEP Enrichment
BP GO:0043069 negative regulation of programmed cell death IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045861 negative regulation of proteolysis IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051248 negative regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051346 negative regulation of hydrolase activity IEP Enrichment
BP GO:0052547 regulation of peptidase activity IEP Enrichment
BP GO:0052548 regulation of endopeptidase activity IEP Enrichment
BP GO:0060548 negative regulation of cell death IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
CC GO:0071986 Ragulator complex IEP Enrichment
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Enrichment
BP GO:2000117 negative regulation of cysteine-type endopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 5 69
IPR020783 Ribosomal_L11_C 74 143
No external refs found!